PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03784.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 285aa    MW: 32460.5 Da    PI: 5.7509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03784.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.6e-50101521129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                              lppGfrFhP+deelv++yL++k+++k          +            + e+d++ +ePw+Lp  +k + kewyfFs rd+kyat
  Rsa1.0_03784.1_g00001.1  10 LPPGFRFHPSDEELVCHYLCHKIRAKYdhgdvE---DddagealngatDLVEIDLHVCEPWELPDVAKLNAKEWYFFSFRDRKYAT 92 
                              79**********************999665540...14566777776469**************87788999************** PP

                      NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              g r+nrat sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Rsa1.0_03784.1_g00001.1  93 GYRTNRATISGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                              ************************967888***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-568170IPR003441NAC domain
PROSITE profilePS5100553.96710170IPR003441NAC domain
PfamPF023651.1E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCH KIRAKYDHGD VEDDDAGEAL NGATDLVEID  60
LHVCEPWELP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSSLQDNN  180
NEHQTQRFEV NDAPDLPPPL TLHIIMITCG WEQMMIGSMS SSSSHGPDHE SLLNLLYADN  240
NNTVNITDDN YGQNYGKILL SSDITNLDHY KTCMASSSDG CICGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-461017015168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583657.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ9S8519e-61NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0D3A3R60.0A0A0D3A3R6_BRAOL; Uncharacterized protein
STRINGBra011037.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-147NAC domain containing protein 74